[sib-courses] "GATK Workshop" - Sept 26-28 in Basel

Geoffrey Fucile geoffrey.fucile at unibas.ch
Tue Aug 23 16:43:11 CEST 2016

Dear all,
We are pleased to announce the following training event:

"Genome Analysis Toolkit (GATK) Workshop"

The SIB Swiss Institute of Bioinformatics will be hosting the GATK development team from the Broad Institute to discuss their pipeline for variant discovery from NGS data. The workshop will consist of lectures, discussion and hands-on tutorials, with topics including:

- GVCF workflow for joint variant discovery in cohorts
- RNAseq-specific processing
- somatic variant discovery using MuTect2
- preview of the upcoming GATK version 4, including a new workflow for CNV discovery

The lectures and general discussion will take place on September 26, and participants can choose to participate in a full day of hands-on training on either September 27 or 28.

Further detailed information, prerequisites and application form are available here<http://www.sib.swiss/training/upcoming-training-events/training/gatk-workshop-lecture>.
Any questions? Don't hesitate to contact us at training at sib.swiss<mailto:training at sib.swiss>.

Best wishes,

Geoffrey Fucile, PhD
Bioinformatics Support and Training - sciCORE Computing Center
SIB | Swiss Institute of Bioinformatics
Klingelbergstrasse 50/70 - CH-4056 Basel
Phone: +41 61 267 1873
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